GgaEX0001242 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9866407-9907430:-
Coord C1 exon
chr17:9907360-9907430
Coord A exon
chr17:9883148-9883191
Coord C2 exon
chr17:9866407-9866456
Length
44 bp
Sequences
Splice sites
3' ss Seq
TATCTGTCAATTATTTACAGATC
3' ss Score
7.84
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
ACAAAATCCGGAAACTACCTTTGAAGTGTATGCAGAAGTAACTTATTCGGGCATCAGTTGCATTGGGAAAG
Seq A exon
ATCCTGAGGTGCGGAGGCAATTCCCAGAGGACTACAGTGACCAG
Seq C2 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTTTACGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'1-9,'1-6,2-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF156511=Tox-SGS=PU(24.4=76.0),PF0345613=uDENN=PU(0.1=0.0)
A:
PF156511=Tox-SGS=FE(17.9=100),PF0345613=uDENN=PU(23.0=93.3)
C2:
PF156511=Tox-SGS=FE(20.5=100),PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGAAACTACCTTTGAAGTGT
R:
CTGTCCACGTAAAAGGGGAAACA
Band lengths:
116-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]