DreEX0026409 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23261061-23344725:+
Coord C1 exon
chr22:23261061-23261125
Coord A exon
chr22:23318095-23318138
Coord C2 exon
chr22:23344676-23344725
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCAATTTCTTACAGATC
3' ss Score
10.28
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
TGAGAATCCTGCAAGGACTTTTGATTTGGCTCTTCAAGTTGCGTGTCCATCATCTGAAAATGAAG
Seq A exon
ATCCGACAGTGCTGTGGAAGTTCCCTCAGGACTTTGGAGACCAG
Seq C2 exon
GAGGTCCTGCAGACAGTGCCTAAGTTCTGCTTCCCATTTGACGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_MULTIEX1-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(22.6=93.3)
C2:
PF0345613=uDENN=FE(25.8=100)
Main Skipping Isoform:
ENSDART00000170886fB2248
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAAGGACTTTTGATTTGGC
R:
CTTTCCACGTCAAATGGGAAGC
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]