HsaEX0019115 @ hg19
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197643250-197742062:-
Coord C1 exon
chr1:197741998-197742062
Coord A exon
chr1:197684161-197684204
Coord C2 exon
chr1:197643250-197643299
Length
44 bp
Sequences
Splice sites
3' ss Seq
TACATGTCAATTATTTACAGATC
3' ss Score
6.6
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGCAAATCCAGACAGAACCTTTGACTTGGTGTTGAAAGTGAAATGTCATGCCTCTGAAAATGAAG
Seq A exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG
Seq C2 exon
GAAATACTACAGAGTGTGCCAAAGTTCTGTTTTCCCTTTGACGTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-2/9=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(7.7=66.7)
A:
PF0345613=uDENN=PU(22.6=93.3)
C2:
PF0345613=uDENN=FE(25.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAATCCAGACAGAACCTT
R:
TCAACGTCAAAGGGAAAACAGA
Band lengths:
112-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)