RnoEX0027116 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56129386-56151534:+
Coord C1 exon
chr13:56129386-56129496
Coord A exon
chr13:56129826-56129888
Coord C2 exon
chr13:56151434-56151534
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTTTAGTATTCACTTGTAGCTT
3' ss Score
6.11
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGAAACCTGACGGAGTACTTCGTAGCTGTGGATGTGAACAACATGCTGCGGTTGTACGCCAGCATGCTGCACGAGAGGCGCATCATTATTACCTCGAGCAAATTAAGCACT
Seq A exon
CTTTTCCATCGGAGCTACTTGAAAGACACTTCGGGTCATGATAATAGCTGCTATCCTAACCAG
Seq C2 exon
TTAACTGCCTGTCTCCATGGATCGGCCGCTCTGCTCTACCCGATGTACTGGCAACACATATATATCCCTGTGCTTCCTCCACACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-10/10=9-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(17.9=100)
A:
PF0214116=DENN=PD(3.4=19.0),PF0214116=DENN=PU(8.1=28.6)
C2:
PF0214116=DENN=FE(16.4=100)
Main Inclusion Isoform:
ENSRNOT00000043907fB4032
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGAGGCGCATCATTAT
R:
AGTAGTCCAGCAGGTGTGGAG
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]