RnoEX0027121 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56114438-56151534:+
Coord C1 exon
chr13:56114438-56114507
Coord A exon
chr13:56115261-56115341
Coord C2 exon
chr13:56151434-56151534
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGATCTTTTCTTTGTTTCAGGAA
3' ss Score
12.22
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TTACTTGCCATGGTTTGAAGTGTATTATAAACTTCTAAATACTCTGGCAGATTACTTGGCCAAGGAACTG
Seq A exon
GAAGATGATTTGAATGAAACTCTTAAATCACTCTATAGCCACCCAGTACCGAAGGCAAATACTCCCGTCCACTTGAGTGTG
Seq C2 exon
TTAACTGCCTGTCTCCATGGATCGGCCGCTCTGCTCTACCCGATGTACTGGCAACACATATATATCCCTGTGCTTCCTCCACACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-6/10=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(11.4=100)
A:
PF0214116=DENN=FE(12.9=100)
C2:
PF0214116=DENN=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCCATGGTTTGAAGTGT
R:
AGCAGTAGTCCAGCAGGTGTG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]