DreEX6099168 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23355445-23367775:+
Coord C1 exon
chr22:23355445-23355514
Coord A exon
chr22:23362971-23363051
Coord C2 exon
chr22:23367722-23367775
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTTGTCCTCACAGGAA
3' ss Score
11
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTATCTCCCATGGTTTGAGATTTATTATAAGCTGCTAAATACCCTTGCAGACTACTTATCAAAACACCAG
Seq A exon
GAAGATGACTTGAATGACATGCTGGAAACACTGCACAACCACCCCGTGCCAAAGCCGAATACGCCAGTAAATCTGAGTGTG
Seq C2 exon
CATTCATACTTCGTAGCTCCTGATATTAACGGACTACCCACCATACCTGAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'7-11,'7-8,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
PF0214116=DENN=FE(14.4=100)
C2:
PF0214116=DENN=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTCCCATGGTTTGAGATTTATT
R:
CAGGTATGGTGGGTAGTCCGT
Band lengths:
119-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]