GgaEX1019264 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2404210-2410370:+
Coord C1 exon
chr8:2404210-2404279
Coord A exon
chr8:2405852-2405932
Coord C2 exon
chr8:2410317-2410370
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTAAAAATTATTCCCTATAGGAA
3' ss Score
8.35
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTATTTACCCTGGTTTGAAGTATACTATAAGCTTTTAAATACTCTGGCAGATTATTTGGCTAAAGAGCAG
Seq A exon
GAAAATGACTCAAATGATTTGTTAAAGTCATTGTATAGCCACCCTGTGCCAAAGGCAAATGCTTTAGTCAGTTTAAGTGTG
Seq C2 exon
CACTTGTATTTCATTACTCCTGATATAACTGGATTGCCAACAATCCCTGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
PF0214116=DENN=FE(14.4=100)
C2:
PF0214116=DENN=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGTTTGAAGTATACTATAAGC
R:
ACTTTCAGGGATTGTTGGCAA
Band lengths:
118-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]