BtaEX6070913 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78527036-78541860:-
Coord C1 exon
chr16:78541791-78541860
Coord A exon
chr16:78534139-78534219
Coord C2 exon
chr16:78527036-78527089
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTAACTCTAGGAA
3' ss Score
10.81
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TTACCTGCCATGGTTTGAAGTATATTACAAGCTTCTGAATACTCTGGCAGATTACTTGACTAAGGAACTG
Seq A exon
GAAGACGATTTGAATGAAACTCTGAGATCTCTCTATAACCATCCAGTACCGAAGGCAAACACCCCTGTCAACTTGAGTGTG
Seq C2 exon
CATTCCTGCTTCATTGCCCCTGATGTAACTGGACTGCCAACCATCCCCGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661-'4-15,'4-12,8-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
PF0214116=DENN=FE(14.4=100)
C2:
PF0214116=DENN=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGCCATGGTTTGAAGT
R:
ATTCTCGGGGATGGTTGGCAG
Band lengths:
124-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]