RnoEX0027122 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56115261-56121638:+
Coord C1 exon
chr13:56115261-56115341
Coord A exon
chr13:56120366-56120425
Coord C2 exon
chr13:56121585-56121638
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACTCATTTTTCTCTCATAAGAAC
3' ss Score
4.48
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GAAGATGATTTGAATGAAACTCTTAAATCACTCTATAGCCACCCAGTACCGAAGGCAAATACTCCCGTCCACTTGAGTGTG
Seq A exon
AACCAAGAGCTATTTATTGCCAGTGAGCAAGTTCTGAAAGATGACCCCTCACTAATGCCG
Seq C2 exon
CACTCCTGTTTCATCACACCGGACATAACTGGACTTCCAACCATCCCGGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-7/10=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.9=100)
A:
PF0214116=DENN=FE(9.5=100)
C2:
PF0214116=DENN=FE(14.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTAAATCACTCTATAGCCACCCA
R:
ACTCTCCGGGATGGTTGGAAG
Band lengths:
116-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]