GgaEX0002797 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2384963-2389481:+
Coord C1 exon
chr8:2384963-2385043
Coord A exon
chr8:2387644-2387703
Coord C2 exon
chr8:2389428-2389481
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCATATTGCATAAGAAC
3' ss Score
1.59
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GAAAATGACTCAAATGATTTGTTAAAGTCATTGTATAGCCACCCTGTGCCAAAGGCAAATGCTTTAGTCAGTTTAAGTGTG
Seq A exon
AACCAAGAGATGATTTTTGCAAGTAAGCAAGTTTTGAAAAAACAGCCTTGCCTTGTGTCG
Seq C2 exon
CACTTGTATTTCATTACTCCTGATATAACTGGATTGCCAACAATCCCTGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246_MULTIEX1-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.9=100)
A:
PF0214116=DENN=FE(10.4=100)
C2:
PF0214116=DENN=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAAGTCATTGTATAGCCACCCT
R:
ACTTTCAGGGATTGTTGGCAA
Band lengths:
116-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]