DreEX0003550 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55531782-55532921:-
Coord C1 exon
chr1:55532841-55532921
Coord A exon
chr1:55532331-55532384
Coord C2 exon
chr1:55531782-55531892
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCATGTCTCTCTCTGTCAGATC
3' ss Score
11.11
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ACGAATGAGATGACAGAGCTGCTGTCGGCTCTCTACAAGCACCCGGTTCCTCCGGCCAATGGCTCCATCACGCTGCAGATG
Seq A exon
ATCCCGTACTTTATTGCTCCAGATCCCAAAGCCCTGCCGTCTATTCCGGAGAGT
Seq C2 exon
AGGAACCTGACGGAGCTGGTGGTGGCGGTGGATGTTGGTAATCTGCTCCAGCTCTACGCCAGCATGCTGTTTGAGAGACGGATCCTCATTTACTGCAGTAAACTCAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'8-12,'8-10,10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=FE(9.3=100)
C2:
PF0214116=DENN=FE(15.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGCTCTCTACAAGCAC
R:
CCGTCTCTCAAACAGCATGCT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]