BtaEX6070914 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78523368-78534219:-
Coord C1 exon
chr16:78534139-78534219
Coord A exon
chr16:78527036-78527089
Coord C2 exon
chr16:78523368-78523478
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATTTATTTCCATTGACCAGCAT
3' ss Score
2.86
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAAGACGATTTGAATGAAACTCTGAGATCTCTCTATAACCATCCAGTACCGAAGGCAAACACCCCTGTCAACTTGAGTGTG
Seq A exon
CATTCCTGCTTCATTGCCCCTGATGTAACTGGACTGCCAACCATCCCCGAGAAT
Seq C2 exon
AGGAACCTCACGGAGTACTTCGTGGCCGTGGACGTGAACAACATGCTGCAGCTCTTCGCCAGCATGCTGCACGAGAGGCGCATCATCGTCACGTCCTGGAAGCTCAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661-'8-16,'8-15,11-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.4=100)
C2:
PF0214116=DENN=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCAAACACCCCTGTCAA
R:
TTCCAGGACGTGACGATGATG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]