DreEX0026413 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23362971-23371263:+
Coord C1 exon
chr22:23362971-23363051
Coord A exon
chr22:23367722-23367775
Coord C2 exon
chr22:23371153-23371263
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCTGTTTTCCACAGCAT
3' ss Score
9.87
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GAAGATGACTTGAATGACATGCTGGAAACACTGCACAACCACCCCGTGCCAAAGCCGAATACGCCAGTAAATCTGAGTGTG
Seq A exon
CATTCATACTTCGTAGCTCCTGATATTAACGGACTACCCACCATACCTGAAAGC
Seq C2 exon
AGAAATTTAACCGAGTACTTCGTAGCAGTGGATGTGAACAACATGTTGCACCTTTACGCCAGCATGCTGCATGAGCGACGCATCATCATTACCTCAAGCAAGCTTAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_MULTIEX2-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.4=100)
C2:
PF0214116=DENN=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTGGAAACACTGCACA
R:
ATGCAGCATGCTGGCGTAAAG
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]