HsaEX0019119 @ hg19
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197586789-197621445:-
Coord C1 exon
chr1:197621365-197621445
Coord A exon
chr1:197614820-197614873
Coord C2 exon
chr1:197586789-197586889
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATTTATTTGTATTGATTAGCAT
3' ss Score
3.31
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAAAATGATTTGAATGAAACTCTCAGATCACTGTATAACCACCCAGTACCAAAGGCAAATACTCCTGTAAATTTGAGTGTG
Seq A exon
CATTCCTACTTCATTGCCCCTGATGTAACTGGACTCCCAACAATACCCGAGAGT
Seq C2 exon
TTAACTGCCTGTATCCATGGATCAGCTGCTCTTCTATACCCAATGTATTGGCAACACATATACATCCCAGTGCTTCCTCCACACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-8/9=6-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(18.5=100)
C2:
PF0214116=DENN=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAGTACCAAAGGCAAA
R:
AGTAGTCCAGCAGGTGTGGAG
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)