GgaEX0002798 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2384963-2404649:+
Coord C1 exon
chr8:2384963-2385043
Coord A exon
chr8:2389428-2389481
Coord C2 exon
chr8:2404549-2404649
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCCATGGATTAGCAC
3' ss Score
3.75
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAAAATGACTCAAATGATTTGTTAAAGTCATTGTATAGCCACCCTGTGCCAAAGGCAAATGCTTTAGTCAGTTTAAGTGTG
Seq A exon
CACTTGTATTTCATTACTCCTGATATAACTGGATTGCCAACAATCCCTGAAAGT
Seq C2 exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246_MULTIEX1-5/6=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.9=100)
A:
PF0214116=DENN=FE(8.5=100)
C2:
PF0214116=DENN=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATAGCCACCCTGTGCCAA
R:
CAGTAGTCCAGGAGATGCGGA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]