RnoEX0027142 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9974299-9976424:+
Coord C1 exon
chr9:9974299-9974379
Coord A exon
chr9:9974633-9974686
Coord C2 exon
chr9:9976324-9976424
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGTCTTCCCACTAGCTT
3' ss Score
8.72
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTCACCGAGGCTGAAGAACTCCTACAGAACTTGCAGCAACACCCCTATCTTGGACCCGGTTTTTCAGGGGGACCAAAGACG
Seq A exon
CTTTCTTGTTTTGTGGCTCCGGATGCTGCGGGCCTCCCATCTATTCCTGAGAAT
Seq C2 exon
CTGACAGCCTGCGTTCACGCCTCCTGCGCTCTGCTCTACCCCATGCGCTGGGAGCATGTTTTGATCCCCACGCTGCCCCCGCACCTGCTGGATTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.8=100)
A:
PF0214116=DENN=FE(8.4=100)
C2:
PF0214116=DENN=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACACCCCTATCTTGGACC
R:
CAGCAGTAATCCAGCAGGTGC
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]