HsaEX6092276 @ hg19
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6476868-6477294:-
Coord C1 exon
chr19:6477229-6477294
Coord A exon
chr19:6477085-6477138
Coord C2 exon
chr19:6476868-6476978
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTGCCAATACCCCCACCAGCTT
3' ss Score
2.44
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GGCAGCGGAGTGACGGTCTCCAGCGGGCAGGGTATCCCCCCCCCTACCCGGGGGAATAGCAAGCCG
Seq A exon
CTTTCCTGCTTCGTGGCCCCGGACTCCGGCCGCCTGCCATCCATCCCTGAGAAC
Seq C2 exon
AGGAACCTAACGGAGCTGGTGGTGGCCGTGACTGACGAGAACATCGTGGGGCTGTTCGCGGCGCTCCTGGCCGAGAGAAGAGTCCTGCTCACCGCCAGCAAACTCAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(10.3=31.8)
A:
PF0214116=DENN=FE(10.0=100)
C2:
PF0214116=DENN=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCGGGCAGGGTATC
R:
TGAGCAGGACTCTTCTCTCGG
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)