BtaEX6038705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19223221-19223665:+
Coord C1 exon
chr7:19223221-19223286
Coord A exon
chr7:19223389-19223442
Coord C2 exon
chr7:19223555-19223665
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCAATCCCCCGCCAGCTT
3' ss Score
6.62
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GGCAGTGGAGTGAGGATTGCCAGTGCAGAAGGCCTGCAGTCCCCTGTCCCTGGGAAGAACATGTCG
Seq A exon
CTTTCCTGCTTCGTGGCTCCCGACTCCAGCCGCCTGCCATCCATTCCTGAGAAC
Seq C2 exon
AGGAACCTAACGGAGCTGGTGGTGGCGGTGACCGACGAGAACATCGTGGGACTGTTCGCCGCCCTCCTAGCAGAGCGAAGGGTCCTGCTCACGTCTAGCAAACTGAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(10.3=100)
A:
PF0214116=DENN=FE(8.4=100)
C2:
PF0214116=DENN=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTGAGGATTGCCAGTG
R:
GACCCTTCGCTCTGCTAGGAG
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]