GgaEX1019247 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9117151-9125968:-
Coord C1 exon
chr17:9125888-9125968
Coord A exon
chr17:9123690-9123743
Coord C2 exon
chr17:9117151-9117261
Length
54 bp
Sequences
Splice sites
3' ss Seq
TATTTGCTCTTCTTTTATAGCAC
3' ss Score
9.2
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GATAATCAAAGGAGTGAGCTTCTGGAAACATTTCATAAACTTAGCATCCCTGAGCCAAAAACTCCCGTTCAGCTTGGATTG
Seq A exon
CACTCTTACTTTACTGTGCCTGACATCAGAGAGCTTCCTAGTATACCTGAAAAT
Seq C2 exon
AGAAATCTGACAGAGTATTTTGTAGCAGTTGATGTCAACAACATGCTGCATCTCTATGCCAGTATGCTGTATGAACGCCGCATCCTCATTTGTTGTAGTAAACTCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'21-27,'21-26,22-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=FE(10.2=100)
C2:
PF0214116=DENN=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCCTGAGCCAAAAACT
R:
AACAAATGAGGATGCGGCGTT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]