RnoEX0027105 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22275881-22295487:-
Coord C1 exon
chr3:22295407-22295487
Coord A exon
chr3:22291949-22292002
Coord C2 exon
chr3:22275881-22275991
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCGTGTCTTTTCTTTTCCAGCAT
3' ss Score
10.04
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCCATTCCAGACCCCGGAGTGTCTGTTCACCTCAGCGTG
Seq A exon
CATTCTTACTTCACTGTGCCTGATAGCAGAGAGCTTCCCAGCATACCTGAGAAT
Seq C2 exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAGCGCCGGATCCTCATCATCTGCAGCAAGCTGAGTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX3-1/6=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=FE(11.5=100)
C2:
PF0214116=DENN=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCCCATTCCAGACCCC
R:
GCTGCAGATGATGAGGATCCG
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]