BtaEX6046059 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94771206-94788649:-
Coord C1 exon
chr11:94788569-94788649
Coord A exon
chr11:94784428-94784481
Coord C2 exon
chr11:94771206-94771316
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATCTTCCTTTACAGCAT
3' ss Score
11.96
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGAGTCAGTGGAATGAGCTTCTTGAAACTCTGTACAAACTTCCTATCCCTGACCCAGGAGTGTCTGTTCATCTCAGTGTG
Seq A exon
CATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATCCCTGAGAAT
Seq C2 exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTAAACAACATGTTACATCTGTATGCCAGTATGCTCTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'27-29,'27-27,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=FE(14.7=100)
C2:
PF0214116=DENN=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAGGAGTGTCTGTTCA
R:
AGTGCTGAGTTTGCTGCAAATG
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]