MmuEX0014221 @ mm9
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37876876-37898939:-
Coord C1 exon
chr2:37898859-37898939
Coord A exon
chr2:37894672-37894725
Coord C2 exon
chr2:37876876-37876986
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCGTGTCTTTTCTTTTCCAGCAT
3' ss Score
10.04
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCCATCCCTGATCCTGGAGTGTCTGTTCACCTCAGTGTG
Seq A exon
CATTCTTACTTCACTGTGCCTGATAGCAGAGAGCTTCCCAGCATACCTGAGAAT
Seq C2 exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACGCCGGATCCTCATCATCTGCAGCAAGCTCAGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392_MULTIEX2-8/12=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.4=100)
C2:
PF0214116=DENN=FE(20.0=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCATCCCTGATCCTGG
R:
GCTGCAGATGATGAGGATCCG
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: