DreEX0003545 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8355097-8361616:+
Coord C1 exon
chr21:8355097-8355177
Coord A exon
chr21:8355400-8355453
Coord C2 exon
chr21:8361515-8361616
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTCTCTCTCTCTAGCAT
3' ss Score
11.81
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GACATTCAGTGGAGGGAGTTGTTAGAGTCTCTACATGTGTTAAACATCCCTGATCCTGGAGTGCCTGTGCATTTGAGTGTG
Seq A exon
CATTTGTTTTTCACAGTGCCTGATCCAAGAGAATTACCCAGTATACCTGAAAAT
Seq C2 exon
GAGGAGCCAATCACGTTCAGTGAGGAAACCTTCATCACACACCGGTCCAGCACAATGAGACAGTTTCTGCAGAACGCTATCCAGCTACAGTTCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-6/18=5-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.4=100)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTCAGTGGAGGGAGTTGT
R:
CTGTCTCATTGTGCTGGACCG
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]