HsaEX6062942 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123652013-123671371:-
Coord C1 exon
chr9:123671291-123671371
Coord A exon
chr9:123667026-123667079
Coord C2 exon
chr9:123652013-123652123
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCTTTTCTTTTCTAGCAT
3' ss Score
10.62
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTG
Seq A exon
CATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAAT
Seq C2 exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522-'39-39,'39-36,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=FE(11.2=100)
C2:
PF0214116=DENN=FE(19.8=100)
Main Skipping Isoform:
ENST00000373624fB2017
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTCCCATCCCTGACCCA
R:
TGAGTATCCGGCGTTCGTACA
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains