GgaEX0002797 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2405852-2410370:+
Coord C1 exon
chr8:2405852-2405932
Coord A exon
chr8:2408533-2408592
Coord C2 exon
chr8:2410317-2410370
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCATATTGCATAAGAAC
3' ss Score
1.59
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GAAAATGACTCAAATGATTTGTTAAAGTCATTGTATAGCCACCCTGTGCCAAAGGCAAATGCTTTAGTCAGTTTAAGTGTG
Seq A exon
AACCAAGAGATGATTTTTGCAAGTAAGCAAGTTTTGAAAAAACAGCCTTGCCTTGTGTCG
Seq C2 exon
CACTTGTATTTCATTACTCCTGATATAACTGGATTGCCAACAATCCCTGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.5=100)
C2:
PF0214116=DENN=FE(9.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAAGTCATTGTATAGCCACCCT
R:
ACTTTCAGGGATTGTTGGCAA
Band lengths:
116-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]