MmuEX0014234 @ mm9
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:140951118-140956905:+
Coord C1 exon
chr1:140951118-140951198
Coord A exon
chr1:140955644-140955703
Coord C2 exon
chr1:140956852-140956905
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACTCATTTTTCTTTCATAAGAAC
3' ss Score
3.68
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GAAGAGGATTTGAATGAAACTCTTAAATCACTCTATAACCACCCAGTACCAAAGGCAAACACTCCTGTCAACTTGAGTGTG
Seq A exon
AACCAAGAGCTATTTATTGCCAGTGAGCAAGTTCTGAAAGATGACCCCTCACTAATTCCG
Seq C2 exon
CACTCCTGTTTCATCACACCTGACATAACTGGACTCCCAACGATACCGGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268_MULTIEX1-6/11=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.7=100)
A:
PF0214116=DENN=FE(13.7=100)
C2:
PF0214116=DENN=FE(12.2=100)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTAAATCACTCTATAACCACCCA
R:
ACTCTCCGGTATCGTTGGGAG
Band lengths:
116-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: