BtaEX0001149 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78527036-78534219:-
Coord C1 exon
chr16:78534139-78534219
Coord A exon
chr16:78528255-78528314
Coord C2 exon
chr16:78527036-78527089
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCGCGTATTGTAAGAAC
3' ss Score
2.06
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAAGACGATTTGAATGAAACTCTGAGATCTCTCTATAACCATCCAGTACCGAAGGCAAACACCCCTGTCAACTTGAGTGTG
Seq A exon
AACCAAGAGATATTTTTTGCCAGTGAGCAAGTTCTGAAAGAGCAGCCCTCCTTAGCACGG
Seq C2 exon
CATTCCTGCTTCATTGCCCCTGATGTAACTGGACTGCCAACCATCCCCGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.5=100)
C2:
PF0214116=DENN=FE(9.4=100)
Main Inclusion Isoform:
ENSBTAT00000056230fB199
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGATTTGAATGAAACTCTGAGA
R:
ATTCTCGGGGATGGTTGGCAG
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development