HsaEX0019118 @ hg19
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197614820-197621445:-
Coord C1 exon
chr1:197621365-197621445
Coord A exon
chr1:197616185-197616244
Coord C2 exon
chr1:197614820-197614873
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCATGTATTATAAGAAC
3' ss Score
4.39
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GAAAATGATTTGAATGAAACTCTCAGATCACTGTATAACCACCCAGTACCAAAGGCAAATACTCCTGTAAATTTGAGTGTG
Seq A exon
AACCAAGAGATATTTATTGCCTGTGAGCAAGTTCTGAAAGATCAGCCTGCTCTAGTACCG
Seq C2 exon
CATTCCTACTTCATTGCCCCTGATGTAACTGGACTCCCAACAATACCCGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-7/9=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.5=100)
C2:
PF0214116=DENN=FE(18.5=100)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGAAACTCTCAGATCACTGT
R:
ACTCTCGGGTATTGTTGGGAGT
Band lengths:
125-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)