DreEX0026412 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23362971-23367775:+
Coord C1 exon
chr22:23362971-23363051
Coord A exon
chr22:23364179-23364238
Coord C2 exon
chr22:23367722-23367775
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTATATTTTTGCAAGAGC
3' ss Score
2.8
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAAGATGACTTGAATGACATGCTGGAAACACTGCACAACCACCCCGTGCCAAAGCCGAATACGCCAGTAAATCTGAGTGTG
Seq A exon
AGCAACCACTTACATTTTGCCAATGGGCAAGTAGTGCAGCATCCAGGAAGCAGACAGTTG
Seq C2 exon
CATTCATACTTCGTAGCTCCTGATATTAACGGACTACCCACCATACCTGAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(9.5=100)
C2:
PF0214116=DENN=FE(9.4=100)
Main Inclusion Isoform:
ENSDART00000170886fB2249
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGACTTGAATGACATGCTGG
R:
TTCAGGTATGGTGGGTAGTCCG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]