BtaEX0011018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94750386-94784481:-
Coord C1 exon
chr11:94784428-94784481
Coord A exon
chr11:94771206-94771316
Coord C2 exon
chr11:94750386-94750486
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCTTCTTTCTCCTAGAGA
3' ss Score
9.86
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATCCCTGAGAAT
Seq A exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTAAACAACATGTTACATCTGTATGCCAGTATGCTCTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACT
Seq C2 exon
TTGACTGCCTGCATCCACGGGTCTGCTGCGATGCTCTACCCCATGTTCTGGCAGCACGTGTACATCCCTGTCCTGCCTCCACATCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'28-34,'28-29,31-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.7=100)
A:
PF0214116=DENN=FE(19.8=100)
C2:
PF0214116=DENN=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTATTTTACTGTGCCTGATACC
R:
CAGCAGTAGTCCAGCAGATGTG
Band lengths:
154-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development