HsaEX6062943 @ hg19
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:29324]
Coordinates
chr9:126392655-126429358:-
Coord C1 exon
chr9:126429305-126429358
Coord A exon
chr9:126414292-126414402
Coord C2 exon
chr9:126392655-126392755
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCTTCTTTCTCCTAGAGA
3' ss Score
9.48
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAAT
Seq A exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACT
Seq C2 exon
CTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522-'18-22,'18-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.3=100)
A:
PF0214116=DENN=FE(19.8=100)
C2:
PF0214116=DENN=PU(40.4=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTATTTTACTGTGCCTGATACC
R:
CAGCAGTAGTCCAGCAGATGC
Band lengths:
154-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)