RnoEX0027109 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22217774-22259630:-
Coord C1 exon
chr3:22259530-22259630
Coord A exon
chr3:22239323-22239368
Coord C2 exon
chr3:22217774-22217875
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGTTTCTCTTCACAGTGC
3' ss Score
11.37
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTGACGGCCTGCATCCACGGCTCTGCTGCCATGCTCTACCCCATGTACTGGCAGCATGTGTACATCCCTGTGCTGCCCCCACATCTGCTGGACTACTGCTG
Seq A exon
TGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAG
Seq C2 exon
AAGGTCAGAAACATGGCCCTAGATGATGTTGTGATCTTGAATGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTTCAGAGCCTCCCAAATGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX3-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(21.6=94.1)
A:
PF0214116=DENN=FE(8.2=100)
C2:
PF0214116=DENN=PD(9.3=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGCTCTACCCCATGTA
R:
CAGGGTGTTGGTGTCCACATT
Band lengths:
135-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]