DreEX0003548 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8357186-8361616:+
Coord C1 exon
chr21:8357186-8357286
Coord A exon
chr21:8359116-8359161
Coord C2 exon
chr21:8361515-8361616
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTCTTTTTTTTAGCGC
3' ss Score
11.57
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
TTAACTGCATGTGTTCATGGCGCAGCAGCCATGTTGTATCCCATGTACTGGCAGCATGTTTACATTCCAGTCCTGCCACAGCACTTATTAGACTATTGCTG
Seq A exon
CGCTCCAATGCCGTACCTCATCGGAGTGCATTCCAGTCTAATGGAG
Seq C2 exon
GAGGAGCCAATCACGTTCAGTGAGGAAACCTTCATCACACACCGGTCCAGCACAATGAGACAGTTTCTGCAGAACGCTATCCAGCTACAGTTCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-9/18=8-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.2=100)
A:
PF0214116=DENN=FE(8.3=100)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCATGTTGTATCCCA
R:
CTGTCTCATTGTGCTGGACCG
Band lengths:
142-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]