GgaEX1019260 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2425438-2433162:+
Coord C1 exon
chr8:2425438-2425538
Coord A exon
chr8:2431487-2431532
Coord C2 exon
chr8:2433061-2433162
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTTTTTTCTTCAGTGC
3' ss Score
9.53
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
Seq A exon
TGCACCCATGCCTTATCTAATTGGCGTCCACTTAAGCTTAATAGAG
Seq C2 exon
AGAGTGAAAAATAGATCACTGGAAGATGTGGTTTTGCTAAATGTTGACACAAACCATCTAGAAAACCCTTTTAATGACCTGAACAACCTACCCGGTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'9-11,'9-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.2=100)
A:
PF0214116=DENN=FE(8.3=100)
C2:
PF0214116=DENN=PD(9.4=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCCCAGTGCTTCCTCCG
R:
CCGGGTAGGTTGTTCAGGTCA
Band lengths:
136-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]