DreEX6099166 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23377099-23382389:+
Coord C1 exon
chr22:23377099-23377199
Coord A exon
chr22:23381199-23381244
Coord C2 exon
chr22:23382288-23382389
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTCTCTTTCCAGTGC
3' ss Score
12.94
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TTAACTGCATGCGTGCATGGGTCCACCGCCATGCTCTACCCTATGCACTGGCAGCACATCTTCATCCCTGTACTTCCTCCTCACCTGCTGGATTACTGCTG
Seq A exon
TGCACCCATGCCATATTTGGTCGGAGTTCATCTCAGCCTTTTAGAG
Seq C2 exon
AGAGTAAAGAGCAGATCCCTGGAGGATGTGGTCATTCTGAACGTGGACACAAACACCCTGGAAAGCCCCACAGATGACCTGCACAACCTGCCTAGTGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.2=100)
A:
PF0214116=DENN=FE(8.3=100)
C2:
PF0214116=DENN=PD(9.4=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGCTCTACCCTATGCAC
R:
AGGGTGTTTGTGTCCACGTTC
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]