GgaEX1019260 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2404549-2412271:+
Coord C1 exon
chr8:2404549-2404649
Coord A exon
chr8:2410596-2410641
Coord C2 exon
chr8:2412170-2412271
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTTTTTTCTTCAGTGC
3' ss Score
9.53
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
Seq A exon
TGCACCCATGCCTTATCTAATTGGCGTCCACTTAAGCTTAATAGAG
Seq C2 exon
AGAGTGAAAAATAGATCACTGGAAGATGTGGTTTTGCTAAATGTTGACACAAACCATCTAGAAAACCCTTTTAATGACCTGAACAACCTACCCGGTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'10-17,'10-16,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(16.4=100)
A:
PF0214116=DENN=FE(7.5=100)
C2:
PF0214116=DENN=PD(8.5=50.0)
Main Skipping Isoform:
ENSGALT00000003516fB6706
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCCCAGTGCTTCCTCCG
R:
CCGGGTAGGTTGTTCAGGTCA
Band lengths:
136-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]