RnoEX0027126 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56151434-56161720:+
Coord C1 exon
chr13:56151434-56151534
Coord A exon
chr13:56157052-56157097
Coord C2 exon
chr13:56161619-56161720
Length
46 bp
Sequences
Splice sites
3' ss Seq
CATATATATTTTTAATTTAGTGC
3' ss Score
5.67
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTAACTGCCTGTCTCCATGGATCGGCCGCTCTGCTCTACCCGATGTACTGGCAACACATATATATCCCTGTGCTTCCTCCACACCTGCTGGACTACTGCTG
Seq A exon
TGCCCCAATGCCATACCTGATTGGAATACACTCCAGTCTCATAGAG
Seq C2 exon
AGAGTGAAAAATAAATCATTGGAAGATGTGGTTATGTTAAATGTTGACACAAACACATTAGAATCACCATTTAATGACGTGAACAGCCTGCCCAGTGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX2-2/6=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.017
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(16.4=100)
A:
PF0214116=DENN=FE(20.3=100)
C2:
PF0214116=DENN=PD(23.0=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCCCTGTGCTTCCTCCACA
R:
GGCAGGCTGTTCACGTCATTA
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]