MmuEX0014228 @ mm9
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:140977750-140998670:+
Coord C1 exon
chr1:140977750-140977850
Coord A exon
chr1:140982460-140982505
Coord C2 exon
chr1:140998545-140998670
Length
46 bp
Sequences
Splice sites
3' ss Seq
CATATATATTTTTAATTTAGTGC
3' ss Score
5.67
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTAACTGCCTGTCTCCATGGATCGGCTGCGCTACTCTACCCGATGTACTGGCAACACATATATATCCCCGTGCTTCCTCCACACCTGCTGGACTACTGCTG
Seq A exon
TGCCCCAATGCCATACCTGATTGGAATACACTCCAGTCTCATAGAG
Seq C2 exon
GTCTCGGCCTTGAAAAATAAGCTGAAGAAGCAGTCCACAGCTACGGGAGATGGAGTGGCTCGGGCCTTTCTGAGGGCTCAGGCGGCTTTGTTTGGCTCCTACCGAGATGCTCTGAGATACAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268_MULTIEX1-10/11=9-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.2=100)
A:
PF0214116=DENN=FE(8.3=100)
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACACCTGCTGGACTACT
R:
GCATCTCGGTAGGAGCCAAAC
Band lengths:
135-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types