BtaEX6070916 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78492870-78504141:-
Coord C1 exon
chr16:78504041-78504141
Coord A exon
chr16:78497570-78497615
Coord C2 exon
chr16:78492870-78492971
Length
46 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTATTTTTAATTTAGTGC
3' ss Score
6.95
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTAACTGCCTGTCTGCACGGCTCGGTCGCCCTGCTGTACCCCATGTACTGGCAACACATATACATCCCGGTGCTCCCCCCGCACCTGCTGGACTACTGCTG
Seq A exon
TGCCCCCATGCCGTACCTGATTGGAATACACTCCAGCCTCCTAGAG
Seq C2 exon
AGAGTGAAAAATAAATCACTGGAGGATGTGGTTATGTTAAATGTTGACACAAACACTTTAGAATCACCGTTTAATGACTTGAGCAGCCTTCCAAGCGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661-'15-24,'15-23,16-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.2=100)
A:
PF0214116=DENN=FE(8.3=100)
C2:
PF0214116=DENN=PD(9.4=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACATCCCGGTGCTCCCC
R:
CTTGGAAGGCTGCTCAAGTCA
Band lengths:
139-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]