RnoEX0027108 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22198808-22275991:-
Coord C1 exon
chr3:22275881-22275991
Coord A exon
chr3:22259530-22259630
Coord C2 exon
chr3:22198808-22198933
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTGGCTCCTCTTTGTTGCAGTTG
3' ss Score
8.38
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAGCGCCGGATCCTCATCATCTGCAGCAAGCTGAGTACC
Seq A exon
TTGACGGCCTGCATCCACGGCTCTGCTGCCATGCTCTACCCCATGTACTGGCAGCATGTGTACATCCCTGTGCTGCCCCCACATCTGCTGGACTACTGCTG
Seq C2 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCCACAACCACAGGCGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX3-4/6=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.8=100)
A:
PF0214116=DENN=PD(21.6=94.1)
C2:
PF0345514=dDENN=PU(39.7=64.3)
Main Inclusion Isoform:
ENSRNOT00000091747fB4023
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGACAGAATATTTTGTGGCTGT
R:
TGGCTCAATTTTCAGTGCATTCC
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]