DreEX6099167 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23371153-23381244:+
Coord C1 exon
chr22:23371153-23371263
Coord A exon
chr22:23377099-23377199
Coord C2 exon
chr22:23381199-23381244
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTTTTTTTTCGTAGTTA
3' ss Score
7.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGAAATTTAACCGAGTACTTCGTAGCAGTGGATGTGAACAACATGTTGCACCTTTACGCCAGCATGCTGCATGAGCGACGCATCATCATTACCTCAAGCAAGCTTAGCACT
Seq A exon
TTAACTGCATGCGTGCATGGGTCCACCGCCATGCTCTACCCTATGCACTGGCAGCACATCTTCATCCCTGTACTTCCTCCTCACCTGCTGGATTACTGCTG
Seq C2 exon
TGCACCCATGCCATATTTGGTCGGAGTTCATCTCAGCCTTTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.9=100)
A:
PF0214116=DENN=FE(18.2=100)
C2:
PF0214116=DENN=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTACTTCGTAGCAGTGGA
R:
CTCTAAAAGGCTGAGATGAACTCCG
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]