HsaEX6035786 @ hg19
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197581061-197611951:-
Coord C1 exon
chr1:197611841-197611951
Coord A exon
chr1:197586789-197586889
Coord C2 exon
chr1:197581061-197581106
Length
101 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTTACAAATTTCAGTTA
3' ss Score
6.09
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AGAAATCTTACAGAATATTTTGTTGCCGTGGATGTGAACAACATGCTGCAGCTGTATGCCAGTATGCTGCATGAAAGGCGCATCGTGATTATCTCGAGCAAATTAAGCACT
Seq A exon
TTAACTGCCTGTATCCATGGATCAGCTGCTCTTCTATACCCAATGTATTGGCAACACATATACATCCCAGTGCTTCCTCCACACCTGCTGGACTACTGCTG
Seq C2 exon
TGCCCCAATGCCATACCTGATTGGAATACACTCCAGCCTCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-'20-23,'20-21,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(20.0=100)
A:
PF0214116=DENN=FE(18.3=100)
C2:
PF0214116=DENN=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTACAGAATATTTTGTTGCCGT
R:
CTCTATGAGGCTGGAGTGTATTCC
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)