GgaEX6043489 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2412307-2431532:+
Coord C1 exon
chr8:2412307-2412417
Coord A exon
chr8:2425438-2425538
Coord C2 exon
chr8:2431487-2431532
Length
101 bp
Sequences
Splice sites
3' ss Seq
ACATCTTTTTTTTTTTTTAGTTA
3' ss Score
9.68
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGAAACCTCACTGAGTATGTTGTTGCTGTGGATGTGAACAACATGCTGCAACTTTATGCCAGTATGTTGCATGAGAGAAGAATCATTATTACCTCGAGCAAACTAAGCACT
Seq A exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
Seq C2 exon
TGCACCCATGCCTTATCTAATTGGCGTCCACTTAAGCTTAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.9=100)
A:
PF0214116=DENN=FE(18.2=100)
C2:
PF0214116=DENN=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCACTGAGTATGTTGTTGCT
R:
CTCTATTAAGCTTAAGTGGACGCCA
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]