BtaEX6070915 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78497570-78523478:-
Coord C1 exon
chr16:78523368-78523478
Coord A exon
chr16:78504041-78504141
Coord C2 exon
chr16:78497570-78497615
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTACACTTTCTAGTTA
3' ss Score
7.36
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGGAACCTCACGGAGTACTTCGTGGCCGTGGACGTGAACAACATGCTGCAGCTCTTCGCCAGCATGCTGCACGAGAGGCGCATCATCGTCACGTCCTGGAAGCTCAGCACC
Seq A exon
TTAACTGCCTGTCTGCACGGCTCGGTCGCCCTGCTGTACCCCATGTACTGGCAACACATATACATCCCGGTGCTCCCCCCGCACCTGCTGGACTACTGCTG
Seq C2 exon
TGCCCCCATGCCGTACCTGATTGGAATACACTCCAGCCTCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661-'12-23,'12-21,15-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.9=100)
A:
PF0214116=DENN=FE(18.2=100)
C2:
PF0214116=DENN=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTCACGGAGTACTTCG
R:
CTAGGAGGCTGGAGTGTATTCCA
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]