GgaEX6043489 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2391418-2410641:+
Coord C1 exon
chr8:2391418-2391528
Coord A exon
chr8:2404549-2404649
Coord C2 exon
chr8:2410596-2410641
Length
101 bp
Sequences
Splice sites
3' ss Seq
ACATCTTTTTTTTTTTTTAGTTA
3' ss Score
9.68
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGAAACCTCACTGAGTATGTTGTTGCTGTGGATGTGAACAACATGCTGCAACTTTATGCCAGTATGTTGCATGAGAGAAGAATCATTATTACCTCGAGCAAACTAAGCACT
Seq A exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
Seq C2 exon
TGCACCCATGCCTTATCTAATTGGCGTCCACTTAAGCTTAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'9-16,'9-14,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(17.9=100)
A:
PF0214116=DENN=FE(16.4=100)
C2:
PF0214116=DENN=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCACTGAGTATGTTGTTGCT
R:
CTCTATTAAGCTTAAGTGGACGCCA
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]