RnoEX6044458 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56129386-56157097:+
Coord C1 exon
chr13:56129386-56129496
Coord A exon
chr13:56151434-56151534
Coord C2 exon
chr13:56157052-56157097
Length
101 bp
Sequences
Splice sites
3' ss Seq
TACCCTTCTGTGAATTTTAGTTA
3' ss Score
7.46
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AGAAACCTGACGGAGTACTTCGTAGCTGTGGATGTGAACAACATGCTGCGGTTGTACGCCAGCATGCTGCACGAGAGGCGCATCATTATTACCTCGAGCAAATTAAGCACT
Seq A exon
TTAACTGCCTGTCTCCATGGATCGGCCGCTCTGCTCTACCCGATGTACTGGCAACACATATATATCCCTGTGCTTCCTCCACACCTGCTGGACTACTGCTG
Seq C2 exon
TGCCCCAATGCCATACCTGATTGGAATACACTCCAGTCTCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063-'20-22,'20-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(17.9=100)
A:
PF0214116=DENN=FE(16.4=100)
C2:
PF0214116=DENN=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTACTTCGTAGCTGTGG
R:
TCTATGAGACTGGAGTGTATTCCA
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]