GgaEX1019258 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9816831-9830838:-
Coord C1 exon
chr17:9830728-9830838
Coord A exon
chr17:9825728-9825828
Coord C2 exon
chr17:9816831-9816876
Length
101 bp
Sequences
Splice sites
3' ss Seq
CATTAATCTGTGTTTTTCAGTTA
3' ss Score
7.82
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGAAATCTGACAGAGTATTTTGTAGCAGTTGATGTCAACAACATGCTGCATCTCTATGCCAGTATGCTGTATGAACGCCGCATCCTCATTTGTTGTAGTAAACTCAGCACT
Seq A exon
TTAACTGCTTGCATTCATGGATCTGCAGCTATGCTCTACCCAATGTTCTGGCAGCACGTTTACATTCCTGTTCTGCCCCCACATCTCTTGGACTACTGTTG
Seq C2 exon
TGCCCCAATGCCCTACCTCATTGGAATACATTTAAGTTTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'16-24,'16-22,17-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.8=100)
A:
PF0214116=DENN=FE(18.1=100)
C2:
PF0214116=DENN=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATCTGACAGAGTATTTTGTAGC
R:
TTAAATGTATTCCAATGAGGTAGGGC
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]