GgaEX1019258 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9061816-9117261:-
Coord C1 exon
chr17:9117151-9117261
Coord A exon
chr17:9112151-9112251
Coord C2 exon
chr17:9061816-9061917
Length
101 bp
Sequences
Splice sites
3' ss Seq
CATTAATCTGTGTTTTTCAGTTA
3' ss Score
7.82
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGAAATCTGACAGAGTATTTTGTAGCAGTTGATGTCAACAACATGCTGCATCTCTATGCCAGTATGCTGTATGAACGCCGCATCCTCATTTGTTGTAGTAAACTCAGCACT
Seq A exon
TTAACTGCTTGCATTCATGGATCTGCAGCTATGCTCTACCCAATGTTCTGGCAGCACGTTTACATTCCTGTTCTGCCCCCACATCTCTTGGACTACTGTTG
Seq C2 exon
GGCGAACCCATCACGTTTTGTGAAGAAACATTTGTGTCCCATCGTTCTGCTGTCATGAGGCAGTTCCTTCAGAATGCCATTCAGCTCCAGCTCTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-8/19=7-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.8=100)
A:
PF0214116=DENN=FE(18.1=100)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATCTGACAGAGTATTTTGTAGC
R:
GCTGGAGCTGAATGGCATTCT
Band lengths:
202-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]