RnoEX0027110 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22198808-22239368:-
Coord C1 exon
chr3:22239323-22239368
Coord A exon
chr3:22217774-22217875
Coord C2 exon
chr3:22198808-22198933
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGATTTTCTTTACTTGCAGAAG
3' ss Score
8.52
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
TGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAG
Seq A exon
AAGGTCAGAAACATGGCCCTAGATGATGTTGTGATCTTGAATGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTTCAGAGCCTCCCAAATGATGTG
Seq C2 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCCACAACCACAGGCGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX3-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.2=100)
A:
PF0214116=DENN=PD(9.3=50.0)
C2:
PF0345514=dDENN=PU(39.7=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCATGCCCTACCTCATA
R:
GGCTCAATTTTCAGTGCATTCCG
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]