DreEX0003532 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8359116-8361616:+
Coord C1 exon
chr21:8359116-8359161
Coord A exon
chr21:8359323-8359424
Coord C2 exon
chr21:8361515-8361616
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTGTCGTAACAGAAG
3' ss Score
7.57
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CGCTCCAATGCCGTACCTCATCGGAGTGCATTCCAGTCTAATGGAG
Seq A exon
AAGGTGCGAGGTATGGCTTTAGATGATGTGGTTCTTCTCAATGTAGACACAAACACTCTTGAAACGCCGTTTGATGACCTGCAAAGCCTTCCTAATGATGTG
Seq C2 exon
GAGGAGCCAATCACGTTCAGTGAGGAAACCTTCATCACACACCGGTCCAGCACAATGAGACAGTTTCTGCAGAACGCTATCCAGCTACAGTTCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-10/18=9-12
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.3=100)
A:
PF0214116=DENN=PD(9.4=50.0)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAATGCCGTACCTCATCG
R:
CTGTTTGAAGAACTGTAGCTGGA
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]